African turquoise killifish genome downloads

Download the NotFur1 genome assembly. Files in the archive:

  • NotFur1_genome_draft.fa: fasta genome file
  • NotFur1_protein_coding_gene_models_15-07-2014.gff3: annotated protein coding gene models gff3 file
  • NotFur1_high_confidence_lncRNA_genes.gff3: high confidence lncRNAs genes gff3 file
  • Notfur1_Infernal_predictions.gff3: Infernal predictions for structural RNAs gff3 file
  • NotFur1_rDNA_genes_31-10-2013.gff3: high confidence rRNA genes gff3 file
  • NotFur1_tRNA_genes.gff3: high confidence tRNA genes gff3 file

    Right click to download.


  • NotFur1_genome_draft.masked.fa: masked fasta genome file, using the Teleostei Repbase repeat library and RepeatMasker

    Right click to download.



    Download annotated variant calls from individuals of different turquoise killifish strains. Files in the archive:

  • GATK calls, annotated to their impact on genes using SNPEff. See included README file.

    Right click to download.



    Download higher order scaffolding information for NotFur1 genome assembly. Files in the archive:

  • 2013-09-27_RNAseq_scaffolded_scaffolded_by_RNA.report.agp: agp scaffolding roadmap from RNA-seq data
  • 2015_05_13_LM_Go_RNAseq_assembly_scaffolded_by_LM.report.agp: agp scaffolding roadmap from cross GxM linkage map data

    Right click to download.



    Download excel table of manual gene curation information (password protected)

  • (open using 'unzip Manually_curated_gene_table_current.zip' and enter password).

    Right click to download.


  • About the Website

    This website uses the GMOD/GBrowse architecture.
    The African Turquoise Killifish instance was deployed by Bérénice A. Benayoun with the help of Param Priya Singh.