African turquoise killifish genome downloads
Download the NotFur1 genome assembly. Files in the archive:
NotFur1_genome_draft.fa: fasta genome file
NotFur1_protein_coding_gene_models_15-07-2014.gff3: annotated protein coding gene models gff3 file
NotFur1_high_confidence_lncRNA_genes.gff3: high confidence lncRNAs genes gff3 file
Notfur1_Infernal_predictions.gff3: Infernal predictions for structural RNAs gff3 file
NotFur1_rDNA_genes_31-10-2013.gff3: high confidence rRNA genes gff3 file
NotFur1_tRNA_genes.gff3: high confidence tRNA genes gff3 file
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NotFur1_genome_draft.masked.fa: masked fasta genome file, using the Teleostei Repbase repeat library and RepeatMasker
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Download annotated variant calls from individuals of different turquoise killifish strains. Files in the archive:
GATK calls, annotated to their impact on genes using SNPEff. See included README file.
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Download higher order scaffolding information for NotFur1 genome assembly. Files in the archive:
2013-09-27_RNAseq_scaffolded_scaffolded_by_RNA.report.agp: agp scaffolding roadmap from RNA-seq data
2015_05_13_LM_Go_RNAseq_assembly_scaffolded_by_LM.report.agp: agp scaffolding roadmap from cross GxM linkage map data
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Download excel table of manual gene curation information (password protected)
(open using 'unzip Manually_curated_gene_table_current.zip' and enter password).
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